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Types of RNA

 https://fob-masterniyas.blogspot.com/2024/08/different-types-of-rna.html

Hypo & Hyperchromicity of DNA

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  Hypochromicity and hyperchromicity are phenomena observed in DNA that relate to the absorbance of ultraviolet (UV) light by DNA molecules. These terms describe changes in UV absorbance that occur when DNA transitions between double-stranded and single-stranded forms. Hyperchromicity of DNA Hyperchromicity refers to the increase in UV absorbance that occurs when double-stranded DNA (dsDNA) denatures into single-stranded DNA (ssDNA). Explanation: Base Stacking and Hydrogen Bonding : In double-stranded DNA, the nitrogenous bases (adenine, thymine, cytosine, and guanine) are stacked closely together and held by hydrogen bonds. This stacking and hydrogen bonding reduce the ability of the bases to absorb UV light. Denaturation : When DNA denatures (due to heat, pH change, or chemical agents), the hydrogen bonds between the base pairs break, and the strands separate. As the DNA unwinds, the bases become more exposed and less constrained by stacking interactions. Increased UV Absorpti...

Denaturation and Renaturation of DNA

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 Denaturation and renaturation of DNA are crucial processes that describe the separation and reassociation of the two strands of the DNA double helix. These processes are fundamental to understanding DNA's behavior under various conditions and are essential in many molecular biology techniques. Denaturation of DNA Denaturation refers to the process where the double-stranded DNA (dsDNA) unwinds and separates into two single strands. This occurs when the hydrogen bonds between the complementary base pairs (adenine-thymine and guanine-cytosine) are disrupted. Causes of DNA Denaturation Heat : Heating DNA to a specific temperature causes the hydrogen bonds between base pairs to break. The temperature at which half of the DNA molecules in a solution are denatured is known as the melting temperature (Tm). Chemical Agents : Chemicals like urea or formamide can disrupt hydrogen bonds, leading to denaturation. These chemicals decrease the Tm, meaning DNA denatures at lower temperatures. pH...

Structure and Properties of DNA and its Tm.

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Structure of DNA DNA (Deoxyribonucleic Acid) is a double-stranded molecule composed of two complementary strands of nucleotides. Each nucleotide consists of a phosphate group, a deoxyribose sugar, and one of four nitrogenous bases: adenine (A), thymine (T), cytosine (C), or guanine (G). The structure of DNA is often described as a double helix, where: Strands : The two strands of DNA run in opposite directions (antiparallel) and are held together by hydrogen bonds between the complementary bases. A-T Base Pair : Adenine pairs with thymine through two hydrogen bonds. G-C Base Pair : Guanine pairs with cytosine through three hydrogen bonds. Helical Structure : The DNA double helix has a right-handed twist, with approximately 10.5 base pairs per turn. Major and Minor Grooves : The double helix creates major and minor grooves, which are important for protein-DNA interactions. Properties of DNA Melting Temperature (Tm) The melting temperature (Tm) is a measure of the thermal stability of th...

Structure of purine and pyrimidine nucleotides

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 Purine and pyrimidine nucleotides are essential building blocks of nucleic acids, such as DNA and RNA. Here’s an overview of their structure: Purine Nucleotides Purines are larger, double-ringed structures composed of a fused six-membered and five-membered ring. The most common purines are adenine (A) and guanine (G). Adenine (A) Structure : Adenine consists of a six-membered ring fused to a five-membered ring. It has the molecular formula C₅H₅N₅. The ring structure has alternating double bonds and contains nitrogen atoms at positions 1, 3, 7, and 9. Guanine (G) Structure : Guanine also consists of a six-membered ring fused to a five-membered ring, with the molecular formula C₅H₅N₅O. It has nitrogen atoms at positions 1, 3, 7, and 9, with an additional carbonyl group (=O) at position 6 on the six-membered ring. Pyrimidine Nucleotides Pyrimidines are smaller, single-ring structures. The most common pyrimidines are cytosine (C), thymine (T) in DNA, and uracil (U) in RNA. Cytosine (C...